Automatically assigned DDC number: 572633

Manually assigned DDC number: 0064

Number of references: 16

Title: Structure Comparison and Structure Patterns

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Subject: Ingvar Eidhammer,Inge Jonassen,William R. Taylor Structure Comparison and Structure Patterns

Description: This article investigate different aspects regarding pairwise and multiple structure comparison, and the problem of automatically discover common patterns in a set of structures. Descriptions and representation of structures and patterns are investigated, as well as scoring and algorithms for comparison and discovery. A framework and nomenclature is developed, and a lot of methods are reviewed and placed into this framework. Key words: structure comparison, structure motifs 1 Introduction Sequence and structure patterns can be used for characterising families of proteins which are defined to be sets of functionally or structurally related proteins. The discovery of such patterns can help in the understanding of relationships between sequence, structure, and function of proteins and in a bigger context help to understand the working of living organisms. Sequence patterns can be used to predict, from sequence information only, the structure and function of new proteins. Having fou...

Contributor: The Pennsylvania State University CiteSeer Archives

Publisher: unknown

Date: 2000-01-25

Pubyear: 1999

Format: ps

Identifier: http://citeseer.ist.psu.edu/305718.html

Source: http://www.ii.uib.no/publikasjoner/texrap/ps/1999-174.ps

Language: en

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